Scripts
Here you can find computer scripts to perform rigid orientation and gene expression registration on whole-body confocal scans of Platynereis larvae as described in Asadulina A. et al. Whole-body gene expression pattern registration in Platynereis larvae. EvoDevo 2012, 3:27 [Journal]
Compressed scripts and instructions for the rigid orientation step in ImageJ.
The archive contains an instruction file imagej_instructions.txt and a folder with the scripts.
Compressed scripts and instructions for the non-rigid registration step using ITK.
The archive contains an instruction file itk_instructions.txt and a folder with the scripts.